Scanpy tutorials#
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- Preprocessing and clustering 3k PBMCs (legacy workflow)
- Trajectory inference for hematopoiesis in mouse
- Core plotting functions
- Customizing Scanpy plots
- Integrating data using ingest and BBKNN
- Using other kNN libraries in Scanpy
- Analysis and visualization of spatial transcriptomics data
- Integrating spatial data with scRNA-seq using scanorama